Complete Coding Genome Sequence of a Novel Porcine Reproductive and Respiratory Syndrome Virus 2 Restriction Fragment Length Polymorphism 1-4-4 Lineage 1C Variant Identified in Iowa, USA
Giovani Trevisan, Ganwu Li, Cesar A. A. Moura, Katie Coleman, Pete Thomas, Jianqiang Zhang, Phillip C. Gauger, Michael Zeller, Daniel Linhares
Abstract
A porcine reproductive and respiratory syndrome virus 2 strain was identified in lung samples from nursery piglets associated with a 17.15% mortality rate on a swine farm in Iowa. Open reading frame 5 (ORF5) sequencing indicated that this strain is a restriction fragment length polymorphism (RFLP) 1-4-4 lineage 1C variant strain, and its complete coding genome sequence was determined.
Topics & Concepts
Restriction fragment length polymorphismBiologyPorcine reproductive and respiratory syndrome virusGeneticsWhole genome sequencingLineage (genetic)Coding regionGenomeOpen reading frameRestriction fragmentVirologyGenePolymerase chain reactionPeptide sequenceAnimal Virus Infections StudiesViral gastroenteritis research and epidemiologyVirus-based gene therapy research