SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
Andreas Rempel, Roland Wittler
Abstract
SUMMARY: SANS serif is a novel software for alignment-free, whole-genome-based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network. AVAILABILITY AND IMPLEMENTATION: Implemented in C++ and supported on Linux, MacOS and Windows. The source code is freely available for download at https://gitlab.ub.uni-bielefeld.de/gi/sans. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
Phylogenetic treeComputer scienceSoftwareGenomeTree (set theory)Source codeSet (abstract data type)Code (set theory)DownloadPhylogeneticsComputational biologyPhylogenetic relationshipTheoretical computer scienceData miningBiologyProgramming languageGeneOperating systemCombinatoricsGeneticsMathematicsGenomics and Phylogenetic StudiesGenetic diversity and population structureChromosomal and Genetic Variations