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Increasing pesticide diversity impairs soil microbial functions

Bang Ni, Lu Xiao, Da Lin, Tian-Lun Zhang, Qi Zhang, Yanjie Liu, Quan Chen, Dong Zhu, Haifeng Qian, Matthias C. Rillig, Yong‐Guan Zhu

2025Proceedings of the National Academy of Sciences102 citationsDOIOpen Access PDF

Abstract

Pesticide application is essential for stabilizing agricultural production. However, the effects of increasing pesticide diversity on soil microbial functions remain unclear, particularly under varying nitrogen (N) fertilizer management practices. In this study, we investigated the stochasticity of soil microbes and multitrophic networks through amplicon sequencing, assessed soil community functions related to carbon (C), N, phosphorus (P), and sulfur (S) cycling, and characterized the dominant bacterial life history strategies via metagenomics along a gradient of increasing pesticide diversity under two N addition levels. Our findings show that higher pesticide diversity enriches the abundance of bacterial specialists and opportunists capable of degrading or resisting pesticides, reducing the proportion of bacterial generalists in the absence of N addition. These shifts can complicate multitrophic microbial networks. Under increased pesticide diversity, selective pressure may drive bacteria to streamline their average genome size to conserve energy while enhancing C, N, P, and S metabolic capacities, thus accelerating soil nutrient loss. In comparison, N addition was found to reduce bacterial niche differentiation at higher pesticide diversity, mitigating the impacts of network complexity and functional traits associated with pesticide diversity, ultimately alleviating soil nutrient loss. Our results reveal the contrasting impacts of pesticide diversity on microbial functions under different N input scenarios and emphasize that strategic N fertilizer management can mitigate the ecological effects of pesticide use in agricultural systems.

Topics & Concepts

PesticideBiodiversityBiologyEcologyAgricultureNutrientGeneralist and specialist speciesEnvironmental scienceAgronomyHabitatPesticide and Herbicide Environmental StudiesSoil Carbon and Nitrogen DynamicsPharmaceutical and Antibiotic Environmental Impacts
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