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RNA 5-methylcytosine writer NSUN5 promotes hepatocellular carcinoma cell proliferation via a ZBED3-dependent mechanism

Xinyu Gu, Penghui Li, Xiaohui Gao, Yi Ru, Chen Xue, Shujun Zhang, Yafeng Liu, Xinjun Hu

2024Oncogene32 citationsDOIOpen Access PDF

Abstract

Hepatocellular carcinoma (HCC) is one of the leading contributors to cancer-related mortality worldwide. Nop2/Sun domain family member 5 (NSUN5), a conserved RNA 5-methylcytosine methyltransferase, is conventionally recognized as oncogenic. However, its role in HCC development remains unknown. In this study, we observed a remarkable upregulation of NSUN5 expression in both tumor tissues from patients with HCC, establishing a correlation with unfavorable clinical outcomes. NSUN5 knockdown and overexpression significantly inhibited and promoted HCC cell proliferation, respectively. Additionally, employing a combination of methylated RNA immunoprecipitation sequencing (MeRIP-seq) and RIP-seq techniques, we identified zinc finger BED domain-containing protein 3 (ZBED3) as a novel downstream target of NSUN5. Additionally, we found that the overexpression of ZBED3 counteracted the tumor-suppressing effect of NSUN5 knockdown and simultaneously reversed the inhibition of the Wnt/β-catenin signaling pathway. In summary, we elucidated the oncogenic role of NSUN5 in HCC development and identified the ZBED3/Wnt/β-catenin signaling pathway as its downstream target. This study provides a novel therapeutic target for further development in HCC treatment.

Topics & Concepts

Gene knockdownBiologyWnt signaling pathwayDownregulation and upregulationCancer researchHepatocellular carcinomaCell growthCarcinogenesisMethyltransferaseRNAImmunoprecipitationSignal transductionCancerCell biologyCell cultureGeneticsGeneMethylationRNA modifications and cancerCancer-related molecular mechanisms researchRNA Research and Splicing