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Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms

Rebecca Yee, Florian P. Breitwieser, Stephanie Hao, Belita N. A. Opene, Rachael E. Workman, Pranita D. Tamma, Jennifer Dien-Bard, Winston Timp, Patricia J. Simner

2020European Journal of Clinical Microbiology & Infectious Diseases29 citationsDOI

Topics & Concepts

ResistomeMinionMetagenomicsBiologyMicrobiologyContext (archaeology)Enterococcus faecalisEnterococcus faeciumKlebsiella pneumoniaeNanopore sequencingPlasmidAntibiotic resistanceMultilocus sequence typingConcordanceMedical microbiologyMicrobiomeParasitologyDNA sequencingGeneticsGeneEscherichia coliGenotypeAntibioticsIntegronPaleontologyZoologyBacterial Identification and Susceptibility TestingGenomics and Phylogenetic StudiesAntibiotic Resistance in Bacteria
Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms | Litcius