Nutrient competition predicts gut microbiome restructuring under drug perturbations
Handuo Shi, Daniel Newton, Taylor H. Nguyen, Sylvie Estrela, Juan M. Sánchez, Michael Tu, Po-Yi Ho, Qinglin Zeng, Brian C. DeFelice, Justin L. Sonnenburg, Kerwyn Casey Huang
Topics & Concepts
BiologyCompetition (biology)MicrobiomeNutrientGut floraEcologyGut microbiomeExtinction (optical mineralogy)MetabolomicsDrugSelection (genetic algorithm)Resistance (ecology)EcosystemNicheDrug resistanceEvolutionary biologyNegative selectionMetabolomeStrain (injury)MetagenomicsComputational biologyBacteriaZoologyBiotechnologyTraitCompetitive exclusionGut microbiota and healthEvolutionary Game Theory and CooperationInsect symbiosis and bacterial influences