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MBX: A many-body energy and force calculator for data-driven many-body simulations

Marc Riera, Chris Knight, Ethan F. Bull-Vulpe, Xuanyu Zhu, Henry Agnew, Daniel G. A. Smith, Andrew C. Simmonett, Francesco Paesani

2023The Journal of Chemical Physics57 citationsDOIOpen Access PDF

Abstract

Many-Body eXpansion (MBX) is a C++ library that implements many-body potential energy functions (PEFs) within the "many-body energy" (MB-nrg) formalism. MB-nrg PEFs integrate an underlying polarizable model with explicit machine-learned representations of many-body interactions to achieve chemical accuracy from the gas to the condensed phases. MBX can be employed either as a stand-alone package or as an energy/force engine that can be integrated with generic software for molecular dynamics and Monte Carlo simulations. MBX is parallelized internally using Open Multi-Processing and can utilize Message Passing Interface when available in interfaced molecular simulation software. MBX enables classical and quantum molecular simulations with MB-nrg PEFs, as well as hybrid simulations that combine conventional force fields and MB-nrg PEFs, for diverse systems ranging from small gas-phase clusters to aqueous solutions and molecular fluids to biomolecular systems and metal-organic frameworks.

Topics & Concepts

Molecular dynamicsStatistical physicsMonte Carlo methodPotential energySoftwareForce field (fiction)PhysicsComputer scienceComputational scienceBiological systemChemistryComputational chemistryClassical mechanicsQuantum mechanicsMathematicsBiologyProgramming languageStatisticsMachine Learning in Materials ScienceProtein Structure and DynamicsAdvanced Chemical Physics Studies
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